Journal: Frontiers in Plant Science

Article Title: Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization

doi: 10.3389/fpls.2021.756877

Figure Lengend Snippet: Principal component analysis (PCA) plots showing genetic diversity of wheat and barley accessions used for SNP discovery. (A) About 6,087 wheat accessions were genotyped with the iSelect wheat 90K SNP array (black), exome-sequenced accessions used for linkage disequilibrium (LD) analysis (red), and synthetic derivative accessions capturing D-genome diversity (blue); and (B) 19,778 barley accessions genotyped with GBS (black), with exome-sequenced accessions used for LD analysis (red).

Article Snippet: SNPs on the Infinium 90K SNP array were derived from the transcriptome sequence of 19 bread wheat accessions and 18 tetraploid accessions, while those on the Axiom 820K arrays were based on exome capture sequence from 43 bread wheat and wild species accessions representing the primary, secondary, and tertiary gene pools.

Techniques:

Journal: International Journal of Molecular Sciences

Article Title: Whole-Genome Association Mapping and Genomic Prediction for Iron Concentration in Wheat Grains

doi: 10.3390/ijms20010076

Figure Lengend Snippet: ( A ) Summary of genome-wide association scans for the whole panel of wheat genotypes (369) which were analyzed by using the 90K iSELECT Infinium array and the 35K Affymetrix SNP array for each year (2015/2016/2017) and BLUEs. The horizontal red color line indicated the threshold of −log 10 ( p -value) of 3. ( B ) Quantile-quantile scale representing expected versus observed −log 10 ( p -value).

Article Snippet: The whole wheat germplasm (369 varieties) was genotyped using two marker arrays: a 90K iSELECT Infinium array [ ] and a 35K Affymetrix SNP array (Axiom ® Wheat Breeder’s Genotyping Array, http://www.cerealsdb.uk.net/ ) [ ] and these two arrays were genotyped by TraitGenetics GmbH, Gatersleben, Germany ( www.traitgenetics.com ).

Techniques: GWAS

Journal: International Journal of Molecular Sciences

Article Title: Whole-Genome Association Mapping and Genomic Prediction for Iron Concentration in Wheat Grains

doi: 10.3390/ijms20010076

Figure Lengend Snippet: ( A ) Summary of genome-wide association scans for the subpanel of wheat genotypes (183) which analyzed by using the 90K iSELECT Infinium array, the 35K Affymetrix SNP array and the 135K Affymetrix SNP array for each year (2015/2016/2017) and BLUEs. The horizontal red color line indicated the threshold of −log 10 ( p -value) of 3. ( B ) Quantile-quantile scale representing expected versus observed −log 10 ( p -value).

Article Snippet: The whole wheat germplasm (369 varieties) was genotyped using two marker arrays: a 90K iSELECT Infinium array [ ] and a 35K Affymetrix SNP array (Axiom ® Wheat Breeder’s Genotyping Array, http://www.cerealsdb.uk.net/ ) [ ] and these two arrays were genotyped by TraitGenetics GmbH, Gatersleben, Germany ( www.traitgenetics.com ).

Techniques: GWAS

Journal: Cell reports

Article Title: Massively parallel disruption of enhancers active in human neural stem cells

doi: 10.1016/j.celrep.2024.113693

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: CustomArray 90K oligonucleotide synthesis array , CustomArray , N/A.

Techniques: Virus, Recombinant, Transfection, Membrane, Western Blot, Isolation, SYBR Green Assay, Sequencing, Disruption, Software, Oligonucleotide Synthesis, Flow Cytometry